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    Home » Recipes » Breakfast

    Blueberry Cottage Cheese Muffins

    Published: Mar 17, 2025 · Modified: Oct 10, 2025 by Nicole Addison · This post may contain affiliate links · 31 Comments

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    These Blueberry Cottage Cheese Muffins are soft, moist and higher in protein. The best meal prep breakfast and snack for grab-and-go!

    Table with blueberry cottage cheese muffins with blueberries scattered between.

    Muffins are one of my favourite things to bake, especially as part of weekly meal prep. Mornings can be hectic, so it's always nice to have a grab-and-go breakfast option. As a dietitian, I also appreciate that homemade options are much lower in sugar. These blueberry cottage cheese muffins also have a little extra protein, making them a more balanced option.

    Cottage cheese is also one of the best secret ingredients to add to muffins for the most fluffy, moist, texture. I've added them to savory muffins like these sweet potato muffins and these breakfast muffins, and they've been a hit. Since cottage cheese has a very neutral flavour, it's also amazing in these blueberry muffins. Don't worry- we blend up all the ingredients, so you won't even tell that there's cottage cheese in here.

    Why This Recipe Is Dietitian Approved

    1. Higher protein option. Thanks to the cottage cheese, these muffins are a bit higher in protein, making them an excellent balanced option.
    2. Perfect for an easy meal prep breakfast or snack. I love having these blueberry muffins on hand for a quick grab-and-go option.
    3. Minimal prep time. These muffins only take 15 minutes of prep time, making them an easy addition to your weekly meal prep.

    Ingredients

    Ingredients including blueberries, olive oil, flour, baking powder, eggs, cottage cheese, vanilla, salt, honey, and milk.

    Milk. Any milk of choice will work well. For higher protein and more nutrients, I always opt for cows milk or soy milk.

    Cottage cheese. This is our secret ingredient to create the most moist muffins, white also adding in additional protein.

    Eggs. These provide rise and structure; a key ingredient to help create fluffy muffins.

    Olive oil. After a few rounds of testing, I found that using 2 tablespoon of olive oil or melted butter helps create the perfect texture.

    Flour. I have only tested these muffins using all purpose flour and 1:1 gluten-free flour.

    Blueberries. Fresh blueberries tend to work a bit better in this recipe, as their colour is less likely to run. However, if all you have on hand is frozen blueberries, you can absolutely use them however I would recommend decreasing the total amount to 1 cup as they will add additional moisture- no need to thaw them first.

    Cinnamon. For a warm, comforting flavour.

    Honey. For natural sweetness! If you are in a pinch, maple syrup will also work.

    The complete ingredient list with measurements can be found in the recipe card below. 

    Instructions

    1. Preheat the oven to 400F and prepare a 12-cavity muffin tray.
    Blending wet ingredients in a blender.
    1. To a blender add milk, cottage cheese, eggs, olive oil, honey and vanilla extract. Blend until smooth. 
    Mixing dry ingredients in a bowl.
    1. To a separate large bowl whisk together flour, cinnamon, salt, baking soda and baking powder.
    Mixing blueberry muffin batter.
    1. Slowly whisk the blended wet ingredients into the dry. Fold in the blueberries using a spatula until just combined. Be careful not to overmix.
    Birds eye view of a muffin tray with cottage cheese blueberry muffins.
    1. Divide the batter amongst the 12 muffin cavities (I use a ¼ cup muffin scoop). If there is any remaining batter, divide it amongst the cups. Bake for about 10 minutes at 400℉, before reducing the temperature to 350℉ and baking for another 10-12 minutes or until a toothpick inserted into the center of the largest muffin comes out clean. (DO NOT open the oven in between this helps keep the heat inside the oven). Allow to cool before enjoying

    Substitutions and Variations

    To make gluten-free:  a gluten free 1:1 flour alternative such as Bob's Red Mill or Queen St. Bakery will work fine.

    To make dairy-free: unfortunately I haven't found a dairy-free cottage cheese recipe yet.

    To make nut-free: this recipe is naturally nut-free.

    Try one of these flavour variations to change things up:

    • Add the zest of 1 lemon for a bright and vibrant twist 
    • Add ½ cup chopped walnuts for a nutty twist 
    • Top with a sprinkle of brown sugar for a little sweetness 

    Equipment

    • Muffin tin
    • Mixing bowls
    • Blender

    Storage

    These blueberry cottage cheese muffins can be stored in an airtight container on the counter for up to 2 days. For longer storage, they will stay fresh in the fridge for up to one week or in the freezer for up to 3 months.

    Top Tips for Success

    The key to making the lightest and fluffiest muffins is to avoid over-mixing. When incorporating the wet and dry ingredients and stirring in the blueberries, try to be mindful of how much you are stirring. Less is always better.

    Frequently Asked Questions

    Can I use a gluten free flour alternative?

    1:1 gluten free baking flour like Bob's Red Mill or Queen St. Bakery will work. I have not yet tested a version using almond or oat flour, but if you decide to try, please let me know how it goes!

    Why do you add cottage cheese?

    Cottage cheese muffins are one of my favourite ways to add a bit more protein into my diet without the need for supplements like protein powder. They also add moisture without needing to add large amounts of oil.

    Can I use frozen blueberries?

    Fresh blueberries tend to work a bit better in this recipe as their colour is less likely to run, however frozen berries will also work. I do recommend decreasing the total amount to 1 cup as they will add additional moisture. You do no need to thaw them first.

    Close up of a plate with blueberry cottage cheese muffins.

    More Muffin Recipes

    Save these for your next meal prep:

    • Healthy Breakfast Muffins
    • Banana Blueberry Oatmeal Muffins
    • Vegan Zucchini Breakfast Muffins
    • Banana Oatmeal Chocolate Chips Muffins

    See you in the kitchen!

    PS. I love seeing my recipes in action! If you decide to make these blueberry cottage cheese muffins, don't forget to snap a photo and tag me on Instagram- @nourishedbynic or leave a comment and rating below letting me know how you liked it!

    📖 Recipe

    Table with blueberry cottage cheese muffins with blueberries scattered between.
    Print Recipe Pin Recipe
    4.87 from 23 votes

    Blueberry Cottage Cheese Muffins

    These Blueberry Cottage Cheese Muffins are soft, moist and higher in protein. The best meal prep breakfast and snack for grab-and-go!
    Prep Time15 minutes mins
    Cook Time20 minutes mins
    Total Time35 minutes mins
    Course: Breakfast, Snack
    Cuisine: American
    Keyword: Breakfast, loaves and muffins
    Servings: 12 muffins

    Ingredients 

    • ¼ cup milk
    • 1 cup cottage cheese I like using 1%
    • 2 eggs
    • 2 tablespoon olive oil
    • ½ cup honey
    • 1 teaspoon vanilla extract
    • 1.5 cups all purpose flour
    • 1 teaspoon cinnamon
    • ½ teaspoon salt
    • 2 teaspoon baking powder
    • ½ teaspoon baking soda
    • 1 cup blueberries tossed in flour *see notes

    Instructions

    • Preheat the oven to 400F and prepare a 12-cavity muffin tray ( highly recommend using a silicone muffin tray).
    • To a blender add milk, cottage cheese, eggs, olive oil, honey and vanilla extract. Blend until smooth.
    • To a separate large bowl whisk together flour, cinnamon, salt, baking powder and baking soda.
    • Slowly whisk the blended wet ingredients into the dry. Fold in the blueberries using a spatula until just combined. Be careful not to overmix.
    • Divide the batter amongst the 12 muffin cavities (I use a ¼ cup muffin scoop). If there is any remaining batter, divide it amongst the cups. Bake for about 10 minutes at 400℉, before reducing the temperature to 350℉ and baking for another 10-12 minutes or until a toothpick inserted into the center of the largest muffin comes out clean. (DO NOT open the oven in between this helps keep the heat inside the oven). Allow to cool before enjoying.

    Notes

    We start at a temperature of 400F to help the muffins RISE, I find cottage cheese weighs down the batter slightly so to avoid concave muffins this step is crucial! Once the start to rise we decrease the temperature to 350F to continue the baking!
    I like to toss my blueberries in about 2 tablespoon of flour prior to adding them to the batter. This just helps ensure they don't all sink to the bottom of the muffins.
    2 tablespoon of olive oil can be replaced with 2 tablespoon of melted butter.
    *I have included an estimation of the nutrition information for this recipe below. However, always remember a recipe is so much more than just nutritional content and these numbers do not need to dictate your food choices. Please don't forget that both your body and soul need nourishment! The owner of this website is not liable for this estimation.

    Nutrition

    Serving: 1muffins | Calories: 166kcal | Carbohydrates: 28g | Protein: 6g | Fat: 4g | Saturated Fat: 1g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 2g | Trans Fat: 0.003g | Cholesterol: 31mg | Sodium: 236mg | Potassium: 81mg | Fiber: 1g | Sugar: 15g | Vitamin A: 88IU | Vitamin C: 2mg | Calcium: 70mg | Iron: 1mg
    Did you know....rating and sharing recipes is one of the best ways you can support your favourite food bloggers? If you make this recipe, I would love if you clicked the stars below to leave a rating and/or sharing a photo on social media by tagging @nourishedbynic or using the hashtag #nourishedbynic!

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    Comments

    1. Emily says

      October 10, 2025 at 2:15 am

      My muffins stuck to the muffin cups so much it took off half the muffin. Is there a way to prevent this?

      Reply
      • Nicole Addison says

        October 10, 2025 at 2:14 pm

        Hi Emily- I recommend using a silicone muffin tray as this batter can be quite sticky due to the cottage cheese!

        Reply
    2. Judi C says

      October 08, 2025 at 10:03 pm

      5 stars
      Would gluten free flour work as well?

      Reply
      • Nicole Addison says

        October 09, 2025 at 2:10 pm

        Hi Judi- Yes for sure! Just make sure it's a 1:1 gluten free flour!

        Reply
    3. Kristen says

      August 18, 2025 at 1:53 am

      5 stars
      I’ve made these a bunch for my son. They freeze well! It’s a great muffin base recipe. I’ve switched out the blueberries for mini chocolate chips and it still turns out great. I’ve also experimented with a crumble topping and adding a sugar sprinkle on top, with great results. It’s a great muffin even without a topping!

      Reply
    4. Sapna DMello says

      August 17, 2025 at 7:47 pm

      5 stars
      Delicious and super easy to bake.

      Reply
    5. Melissa Davis says

      August 03, 2025 at 5:07 pm

      5 stars
      This are amazing! I accidentally left out the eggs and no one knew! 🤦🏻‍♀️. Next time I would add the eggs!

      Reply
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    Nicole Addison, RD

    Hi I'm Nicole!

    I’m a Registered Dietitian, recipe developer and content creator on a mission to help individuals rediscover the joys of cooking with easy, accessible, healthy recipes.

    On my page you'll find yummy recipes, wellness tips, and even some of my favourite travel and lifestyle recommendations!

    More about me →

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