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    Home » Recipes » Breakfast

    The Ultimate Healthy Gingerbread Muffins

    Published: Nov 13, 2025 · Modified: Feb 25, 2026 by Nicole Addison · This post may contain affiliate links · 24 Comments

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    These healthy gingerbread muffins are going to be your go-to snack this holiday season. They're gluten free, high in fibre, and full of warming spices!

    It's officially holiday baking season!! Making seasonal treats is definitely one of the best parts of this time of year- but as much as peppermint shines in the spotlight, gingerbread will always have a special place in my heart (or should I say stomach?). I decided to make these oat flour gingerbread muffins because I wanted to incorporate my favourite wintery spices into a nourishing snack, and these don't disappoint! I'm so excited for you to give them a try.

    Table of contents

    • Why You Need These Oat Flour Muffins
    • Main Ingredients For Healthy Gingerbread Muffins
    • How To Make Oat Flour Gingerbread Muffins
      • Instructions
    • Substitutions and Variations
      • Equipment
      • Storage
    • Top Tips for Success
    • Frequently Asked Questions
    • More Recipes You Might Like
    • See you in the kitchen!

    Why You Need These Oat Flour Muffins

    Baked goods are one of my favourite things to batch-prep, but I'm especially fond of these oat flour muffins for a couple of reasons:

    1. High fibre- Thanks to the whole grain oats in the flour, these oat flour gingerbread muffins make a great high fibre addition to your breakfast and snack rotation. We know how important fibre is for digestive health, and it's often lacking during the frenzy of other cookies and desserts.
    2. Gluten free- Gluten is not something to be worried about unless you have Celiac disease, but for those who can't tolerate it these gluten free gingerbread muffins do just the trick.
    3. Snack, breakfast or dessert- I love a yummy baked good that can do all of the above! These muffins have just the right amount of sweetness that satisfies my dessert craving, but don't overdo at breakfast either.

    Main Ingredients For Healthy Gingerbread Muffins

    Ingredients for muffins includes oat flour, eggs, spices, molasses, milk, vanilla extract, coconut oil, pumpkin puree, baking powder, baking soda, white chocolate, honey
    • Oat flour- When I'm looking for oat flour recipes muffins tend to be a good choice. I'm a big fan of oat flour because it's gluten free, a whole grain, and high in fibre. I used this one, however you can always make your own by blitzing rolled or quick oats in a blender/food processor until it reaches a flour consistency.
    • Pumpkin puree- I love using pumpkin puree in baking for the moisture it adds. Not only does it help everything bind together, it's a great source of vitamin A!
    • Honey and molasses- Molasses is essential for the classic gingerbread flavour. It can have a bit of a strong flavour though, so I used a combination of honey and molasses together.
    • Spices- Gingerbread is usually spiced with a mixture of cinnamon, ginger, cloves and nutmeg. If you're missing one of these it's not a big deal, but I would definitely make sure you don't skip the cinnamon!
    • Coconut oil- You can also swap this for another neutral-tasting oil.
    • White chocolate- Obviously a white chocolate drizzle is optional, but are you really going to skip it?

    How To Make Oat Flour Gingerbread Muffins

    Instructions

    Wet ingredients combined in a large mixing bowl
    1. Step 1: In a large bowl, combine pumpkin purée, honey and coconut oil in a bowl using an electric mixer. Beat in the eggs one at a time, then and add milk, molasses and vanilla extract. 
    Dry ingredients whisked together in a separate bowl
    1. Step 2: In a separate bowl, whisk together oat flour, spices, baking powder, baking soda and salt. 
    Birdseye view of muffin tray with finished muffins
    1. Step 3: Slowly add the Oat Flour mixture to the wet ingredients and stir to combine. 
    2. Step 4: Bake at 375F for about 20 minutes. You can check if they're fully done when a toothpick inserted in the centre comes out clean.
    Muffins with white chocolate drizzle
    1. Step 5: Once cooled, drizzle with melted white chocolate.

    Substitutions and Variations

    Looking for a coconut oil substitute?

    The only substitute I have ever tested is melted butter- this option works perfectly! You may be able to substitute with applesauce however I have not yet tested this version!

    Looking for a replacement for the oat flour?

    You can use an equal amount of all-purpose flour or 1:1 gluten free flour! 

    Equipment

    • Muffin tin
    • Mixing bowls

    Storage

    These Healthy Gingerbread Muffins can be stored on the counter in an airtight container for up to 3 days. For longer storage I recommend storing in an airtight container in the fridge for up to one week.

    To freeze: Wrap each muffin individually in saran wrap and store in a large freezer safe container or Ziploc bag. Defrost in the fridge before enjoying!

    Top Tips for Success

    Avoid over mixing the batter! I find the best way to guarantee light and airy muffins is to mix the wet and dry ingredients until JUST combined! 

    Frequently Asked Questions

    Are these muffins good for breakfast?

    Yes, I love having them for breakfast! The best part about oat flour muffins is that they already check the fiber box, so all you have to add is protein and some colour. I sometimes serve these with some hard-boiled eggs and whatever fruit I've got on hand.

    Can you freeze these?

    You can! Make sure they cool completely to room temperature, then store them in an airtight freezer-safe bag for up to 3 months.

    Can I sub all-purpose flour for the oat flour?

    Yes, it works very similarly.

    Stack of oat flour gingerbread muffins

    More Recipes You Might Like

    If you enjoyed these healthy gingerbread muffins, I'd highly suggest these other recipes for your next bake!

    • The Best Oat Flour Pumpkin Muffins
    • Cozy Cinnamon Sugar Baked Oats
    • Fudgy Vegan Double Chocolate Banana Muffins
    • Cozy Chai Oatmeal Cookies
    oat flour pumpkin muffins
    Pumpkin Oat Flour Muffins
    cinnamon sugar baked oats
    Cinnamon Sugar Baked Oats
    oatmeal chai cookie close up
    Chai Spiced Oatmeal Cookies

    See you in the kitchen!

    PS. I love seeing my recipes in action! If you decide to make these Healthy Gingerbread Muffins, don't forget to snap a photo and tag me on Instagram- @nourishedbynic or leave a comment and rating below letting me know how you liked it!

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    4.93 from 14 votes

    The Ultimate Healthy Gingerbread Muffins

    These healthy gingerbread muffins are going to be your go-to snack this holiday season. They're gluten free, high in fibre, and full of warming spices!
    Prep Time10 minutes mins
    Cook Time20 minutes mins
    Total Time30 minutes mins
    Course: Breakfast, Dessert, Snacks
    Cuisine: American
    Keyword: Breakfast, loaves and muffins
    Servings: 10 Muffins

    Ingredients 

    • ¾ cup pumpkin puree
    • 4 tablespoon coconut oil melted and cooled
    • ½ cup honey
    • ¼ cup molasses
    • 2 medium eggs
    • ¼ cup milk
    • 1 teaspoon vanilla extract
    • 1+¾ cup Oat Flour
    • 1 teaspoon ground cinnamon
    • 1 teaspoon ground ginger
    • ¼ teaspoon ground cloves
    • ¼ teaspoon ground nutmeg
    • 1 teaspoon baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon salt
    • Top with: drizzled melted white chocolate

    Instructions

    • In a large bowl, combine pumpkin purée, honey and coconut oil in a bowl using an electric mixer. Beat in the eggs one at a time, and add milk, molasses and vanilla extract.
    • In a separate bowl, whisk together oat flour, spices, baking powder, baking soda and salt.
    • Slowly add the Oat Flour mixture to the wet ingredients and stir to combine.
    • Bake at 375F for about 20 minutes.
    • Once cooled, drizzle with melted white chocolate.

    Notes

    ** note: all purpose flour can be subbed for the oat flour

    Nutrition

    Serving: 1muffin | Calories: 259kcal | Carbohydrates: 48g | Protein: 7g | Fat: 5g | Saturated Fat: 1g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.003g | Cholesterol: 33mg | Sodium: 241mg | Potassium: 341mg | Fiber: 3g | Sugar: 22g | Vitamin A: 2918IU | Vitamin C: 1mg | Calcium: 83mg | Iron: 3mg
    Did you know....rating and sharing recipes is one of the best ways you can support your favourite food bloggers? If you make this recipe, I would love if you clicked the stars below to leave a rating and/or sharing a photo on social media by tagging @nourishedbynic or using the hashtag #nourishedbynic!

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    Comments

    1. Elizabeth says

      February 05, 2026 at 2:30 pm

      5 stars
      Instead of muffins, could this be made in a loaf pan?

      Reply
    2. Ann Leverton says

      December 14, 2025 at 6:53 pm

      5 stars
      Wonderful!
      I added some raisins for texture and collagen to bump the protein

      Reply
    3. Alana says

      March 26, 2025 at 6:07 pm

      5 stars
      Hands down one of my favourite recipes (so far)! I like to bake these whenever I’m attending a family gathering, and they always get the best reviews! These are amazing!

      Reply
    4. Carrie Kadar says

      February 20, 2025 at 6:20 pm

      5 stars
      I have made these so many times. I have celiac, and these don't taste it. They're so moist. They freeze well too.

      Highly recommend this recipe.

      Reply
    5. Rose says

      January 28, 2025 at 11:28 pm

      Can you sub the coconut oil? Maybe applesauce?

      Reply
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    Nicole Addison, RD

    Hi I'm Nicole!

    I’m a Registered Dietitian, recipe developer and content creator on a mission to help individuals rediscover the joys of cooking with easy, accessible, healthy recipes.

    On my page you'll find yummy recipes, wellness tips, and even some of my favourite travel and lifestyle recommendations!

    More about me →

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